Sample identity
- Trajectory ID
- RDB002428__8D1V_1_B-C
- Source structure
- 8D1V_1_J-N
- Length
- 52 nt
- Canonical chains
- B, C
- Partition
- train
MD-derived metadata
12.56 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 29.07 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
UUGAUGUCACGGAACACGUUCUUUGAACCAAGCUAGCUUGGUUCAAAGAACG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | J |
| C | C | C | N |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
07cdee45d9ed9174fd129f1cb9733320ddc2bd628821ae29ee626e2a8bb6ad62
rna.gro · SHA-256
8e4b81da479ae43c13538740a0de8b6baf25280a331ed79c30e304db1763bef9
rna.pdb · SHA-256
04771aeb3c043a7c21386f2750093a8f68d3722c6841ffa64af4b6c5e570b3e4