Sample identity
- Trajectory ID
- RDB002445__8D9H_1_B-C
- Source structure
- 8D9H_1_C-D
- Length
- 56 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
15.87 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 29.92 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
GACUUAAUGUCACGGUACCCAAUUUUCUGCCCCGGAUCCGGGGCAGAAAAUUGGGU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | C |
| C | C | C | D |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
29db2604895a8ca0622bcd0f172f0d010c958ae968dc6f673bef6b8b36f207b4
rna.gro · SHA-256
3a78bc87250209bf50c791627958c5afa904e74390e018b9c68b793539be6737
rna.pdb · SHA-256
85ef8fa7d7447c049b0e18e77d6db22ff9f3a69d4c4abf44e7d06e0f04cf622c