Sample identity
- Trajectory ID
- RDB002452__8DG7_1_B-C
- Source structure
- 8DG7_1_F-E
- Length
- 47 nt
- Canonical chain set
- B-C
- Partition
- train
MD-derived metadata
4.10 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 20.18 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B → C
GAGGUAGUAGGUUGUAUAGUACAUACUAUACAACCUACUACCUCUCU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | B | B | E |
| C | C | C | F |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
27a21c1e68ec84fb8ed3c83890827174fdc3ae1c50cd9794d26e2a37896abba5
rna.gro · SHA-256
47af43a207e9f8696ba2d04edd458d722cd641b665ff4e8553b89d24ac6edbab
rna.pdb · SHA-256
bd44f91c1415901b0e0ef4e81d5d8deb9f439d19f4478da68b51e9c08bd34a7d