Sample identity
- Trajectory ID
- RDB002539__8HHL_1_A
- Source structure
- 8HHL_1_B
- Length
- 49 nt
- Canonical chains
- A
- Partition
- train
MD-derived metadata
14.47 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 25.95 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
AGCCCAGCUUGGCGGGCGAAGGCCAAGACGGAGAUGAGGUGCGCGUGGC
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| A | A | A | B |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: geometry:rg_spike
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
RNADynBench-v0.1-20261001
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Coming soon |
| rna.gro | Matching initial coordinates / topology | Coming soon |
| rna.pdb | Matching initial structure with PDB chain mapping | Coming soon |
rna.xtc · SHA-256
16638deb52c446faa5ad819b62c5abc5e0f4ca7a11837e238fed6fc322f02190
rna.gro · SHA-256
d8807b8a77ec83d0924645f7d4ff0fbc18581b10b13900ff741cdef6a9be5a2a
rna.pdb · SHA-256
22521e0fcd08beffdc9e9de141fa2ff6b3ef72f7cd3b16666ce7f8a9b5252b62