Sample identity
- Trajectory ID
- RDB002572__8P5D_1_B
- Source structure
- 8P5D_1_L70
- Length
- 119 nt
- Canonical chain set
- B
- Partition
- train
MD-derived metadata
5.11 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 34.82 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: B
AGUUACGGCCAUAUCUACUGAAAAACACCGGAUCCCGUCCGAUCUCCGAAGUUAAGCCAAUAAGAGCCAUGCGAGUAUUAAGGUGGGCGACUACUUGAGAAAGCGUGGUGCUGUAGUUU
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| B | A | B | L70 |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
cabb4d788ea64ffca6deade66cef6146b208c38ad450929dd44d06a382fdd020
rna.gro · SHA-256
3f0389b92c6d59c54a83a5df430d264dc4568f8efbcf2111ac8fb84107f9f0af
rna.pdb · SHA-256
7678ba515ea2abe11e187c5dc4c122a764c8da824e7912a2e170f400a1b4384e