Sample identity
- Trajectory ID
- RDB002575__8Q5I_1_D-XB
- Source structure
- 8Q5I_1_10-g
- Length
- 14 nt
- Canonical chain set
- D-XB
- Partition
- train
MD-derived metadata
2.51 Å
Median heavy-atom RMSD to frame 0, without an additional fit.
- Mean radius of gyration
- 11.06 Å · heavy atoms
- Frames
- 1,001 · 0–100 ns
- Coordinate status
- pass
These are MD statistics, not RNADynNet predictions. Calculation details
Structure & trajectory preview
Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.
The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.
Sequence & chain mapping
Sequence order: D → XB
CUGCUACCAGGCAG
| Canonical chain | PDB chain | label_asym_id | auth_asym_id |
|---|---|---|---|
| D | D | D | 10 |
| XB | A | XB | g |
Residue-level mapping and atom ranges will accompany the trajectory package.
Quality information
Current warnings: None recorded in this field.
A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.
Files & integrity
v1.0
| File | Contents | Availability |
|---|---|---|
| rna.xtc | RNA-only coordinates · 1,001 frames | Available on Box |
| rna.gro | Matching initial coordinates / topology | Available on Box |
| rna.pdb | Matching initial structure with PDB chain mapping | Available on Box |
rna.xtc · SHA-256
624b9c2ec1bbff632ab31f57acc73a815c16be55c5e0c1ee71371c1e37a87217
rna.gro · SHA-256
112a69e5c1f81fbd0be3881de139c938b0e5a4ded8320b7f65f7dfc56b936801
rna.pdb · SHA-256
d6d87fe478182c3921cf33db4d220a7ba4e2fa7dcc878af516dba7fdaa280648