5E54 · A / B

rna_00055__5E54_1_A-B

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00055__5E54_1_A-B
RNA-Solo ID: rna_00055
Split identity: rna_00055
Source structure: 5E54_1_B
Length: 133 nt
Canonical chains: A, B
Partition: test_struct

MD-derived metadata

5.95 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 24.95 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
A	A	A	A
B	B	B	B

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

1b9301b4fc3c392fddfdb8eec9298a0edc404b5597c7a874439a6692a6c8835c

rna.gro · SHA-256

99bf68f39a22f9a65bbe574b763fc7b1a885f523b1dee1b9e9e08af5b9449274

rna.pdb · SHA-256

c6f76db9d98b3c0f64d2f7910b3fa260c8a063d3788992bdd69fdc87928f657e