8AMK · C / E / F / X

rna_00076__8AMK_1_C-E-F-X

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00076__8AMK_1_C-E-F-X
RNA-Solo ID: rna_00076
Split identity: rna_00076
Source structure: 8AMK_1_E-F
Length: 36 nt
Canonical chains: C, E, F, X
Partition: test_flex

MD-derived metadata

18.55 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 17.40 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

AUGUGGCAUAUGUGGCAUAUGUGGCAUAUGUGGCAU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
C	C	C	C
E	E	E	E
F	F	F	F
X	X	X	Z

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

716e3a85628f35ddb6cd0ca9a6ddc341e9afa901c8980110549d8b099f2e07b1

rna.gro · SHA-256

c4f9921f2136101a280a872065dd2c669b5e31925d9ff6480f03d00eb26f61d4

rna.pdb · SHA-256

dc8ce9a36a2be89ebf231eeb85cf7cbbda24b30e3432d41075709b2c45ecfc08