4PWD · E

rna_00078__4PWD_1_E

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00078__4PWD_1_E
RNA-Solo ID: rna_00078
Split identity: rna_00078
Source structure: 4PWD_1_T
Length: 21 nt
Canonical chains: E
Partition: val

MD-derived metadata

8.37 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 20.22 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

CGGCGCCCGAAACAGGGACUG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
E	E	E	T

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rg_spike

Inherited warnings: geometry:rg_spike

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

360f249e3cc3aa99a15445b7de75e7b55962993eedb8e7e4a88957be4a7ee51a

rna.gro · SHA-256

62751f15822414cebeeb4d7b8bd7447003da704aab051f1ef92f31338456c57a

rna.pdb · SHA-256

33e55a6c3c7d62adae7b2ab9930d809d7bf962f92e6f821047f7f3b301e202f4