3J9Z · Z

rna_00105__3J9Z_1_Z

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00105__3J9Z_1_Z
RNA-Solo ID: rna_00105
Split identity: rna_00105
Source structure: 3J9Z_1_LB
Length: 120 nt
Canonical chains: Z
Partition: train

MD-derived metadata

6.66 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 33.46 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
Z	A	Z	LB

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

rna_00105__3J9Z_1_A

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

d1e319bfd84a11ece4591c82af0fba41ea6109ac80ed643503a2c2d3ae4aa05f

rna.gro · SHA-256

a387cea09dc008bce202e0d1481b4e95dc23e825b5b140e6f8c54f166eb110da

rna.pdb · SHA-256

2a77ad05ec3d74cfcda268645d2cb83563937f5cf095ef08c606499cc109af48