5UK4 · OA

rna_00114__5UK4_1_OA

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00114__5UK4_1_OA
RNA-Solo ID: rna_00114
Split identity: rna_00114
Source structure: 5UK4_1_u
Length: 45 nt
Canonical chains: OA
Partition: train

MD-derived metadata

22.67 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 30.06 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

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Canonical chain	PDB chain	label_asym_id	auth_asym_id
OA	A	OA	u

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rmsd_high

Inherited warnings: geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

0cda84fc7e42397d6f5f7b089fce23ed9d15d30be1fa49a536d46f5ee12d5d7b

rna.gro · SHA-256

7cdf0bce779debdf863cbfebc682c8aea55382900340b045b993d34dacf1a2d6

rna.pdb · SHA-256

09b7cd789e0a457b6f919911d38d69b9a6bce27de7a7b70db986b063c1b9f75c