1YKV · A / B / D

rna_00206__1YKV_1_A-B-D

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00206__1YKV_1_A-B-D
RNA-Solo ID: rna_00206
Split identity: rna_00206
Source structure: 1YKV_1_B
Length: 87 nt
Canonical chains: A, B, D
Partition: train

MD-derived metadata

3.79 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 22.25 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GGAGCUCGCCCGGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGCGGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGC

Canonical chain	PDB chain	label_asym_id	auth_asym_id
A	A	A	A
B	B	B	B
D	D	D	D

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

7da4f49ad6f99e7218a1d6bf188f9c1c328a6bd64064b074d9f94faa164e1838

rna.gro · SHA-256

2e31f05962520326aae65ac3804ae4aee87e7fe443750b18b0de1cfac8ed7934

rna.pdb · SHA-256

835a2b94da79c1f2f119286e8aee86dc38b9ea8bc87aa955499a39bb78357335