4V87 · YB

rna_00373__4V87_1_YB__repeat01

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00373__4V87_1_YB__repeat01
RNA-Solo ID: rna_00373
Split identity: rna_00373
Source structure: 4V87_1_CB
Length: 87 nt
Canonical chains: YB
Partition: train

MD-derived metadata

4.16 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 23.78 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCA

Canonical chain	PDB chain	label_asym_id	auth_asym_id
YB	A	YB	CB

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

rna_00373__4V87_1_A__repeat01

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

b625615c68ccbbdb9d90477b12e74b7ab0686dc5bd99b5c29442c38b0d55496f

rna.gro · SHA-256

2a6b3a6e9f8991d553ad1e4a0a7f47f53ed458261fb85b31bcff480b5095f895

rna.pdb · SHA-256

636e5973436d655ef3884b1faf9ddf3c92128e37e38056e7bc545f802fc6b8b0