1M5P · D / E / F

rna_00387__1M5P_1_D-E-F

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00387__1M5P_1_D-E-F
RNA-Solo ID: rna_00387
Split identity: rna_00387
Source structure: 1M5P_1_E
Length: 112 nt
Canonical chains: D, E, F
Partition: val

MD-derived metadata

5.18 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 26.44 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GGCCACCUGACAUCCUCUCCGGAGAGAGAAGUCAACCAGAGAAACACACCAACCCAUUGCACUCCGGGUUGGUGGUAUAUUACCUGGUACGGGGGAAACUUCGUGGUGGCCG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
D	D	D	D
E	E	E	P
F	F	F	E

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

0a53bdfeb075bbc3f9d08e8f5661a3615759c93d5734b39a945fd59e553e38f0

rna.gro · SHA-256

0a10355bd17595cd0a0d7a4a6ae0669be6b173c679d55267ac26e2a1bf8dcf76

rna.pdb · SHA-256

eea788d504f9496b6d4f4a187df2b0e8f9cd894f061263aed51942ffd193aa60