1M5V · D / E / F

rna_00387__1M5V_1_D-E-F

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00387__1M5V_1_D-E-F
RNA-Solo ID: rna_00387
Split identity: rna_00387
Source structure: 1M5V_1_E
Length: 112 nt
Canonical chains: D, E, F
Partition: val

MD-derived metadata

4.39 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 25.96 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GGCCACCUGACGUCCUCUCCGGAGAGAGAAGUCAACCAGAGAAACACACCAACCCAUUGCACUCCGGGUUGGUGGUAUAUUACCUGGUACGGGGGAAACUUCGUGGUGGCCG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
D	D	D	D
E	E	E	P
F	F	F	E

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

0d45ff3f9b1463edcb32f73775a947546b237ff6d2139ed75ec1fe6bb8dbaf7d

rna.gro · SHA-256

7276fc6ae98ff9464b38fdd760c3ad911080715f8ac7a981f18d585045119bf7

rna.pdb · SHA-256

7523e035ade894677b7d165d60f14ee6d8383eef139a5d89c079a61da964a553