5DDP · A / B

rna_00467__5DDP_1_A-B

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00467__5DDP_1_A-B
RNA-Solo ID: rna_00467
Split identity: rna_00467
Source structure: 5DDP_1_A
Length: 122 nt
Canonical chains: A, B
Partition: train

MD-derived metadata

5.35 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 28.68 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

CGUUGACCCAGGAAACUGGGCGGAAGUAAGGUCCAUUGCACUCCGGGCCUGAAGCAACGCGCGUUGACCCAGGAAACUGGGCGGAAGUAAGGUCCAUUGCACUCCGGGCCUGAAGCAACGCG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
A	A	A	A
B	B	B	B

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

82d259d0a391b263a3c24b9e4d09598cfd6f47886eab3ccaaae109a58da41d24

rna.gro · SHA-256

c45c1ca82f619d445233afa7fadd8b84d23f62055a04b8a26316ac10e0ebf379

rna.pdb · SHA-256

57609fc519e9ef2c4f297134b6496c832f3702022afdad5e2a698b94a524a555