1YYK · A / B / C / D

rna_00563__1YYK_1_A-B-C-D__repeat01

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00563__1YYK_1_A-B-C-D__repeat01
RNA-Solo ID: rna_00563
Split identity: rna_00563
Source structure: 1YYK_1_E-F
Length: 48 nt
Canonical chains: A, B, C, D
Partition: train

MD-derived metadata

3.17 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 21.01 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

CGCGAAUUCGCGCGCGAAUUCGCGCGCGAAUUCGCGCGCGAAUUCGCG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
A	A	A	C
B	B	B	D
C	C	C	E
D	D	D	F

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

7920415ace5e10b0590354d49ee95c92f6b4c9cf722e102fc55cd4b07c875e7f

rna.gro · SHA-256

cae111dcb752cba71518012aed4228575034960bb0e9ddf508bb18aa349c810f

rna.pdb · SHA-256

e09fcd66e57866ca3c6db38bcada5e26a7010a3a39b83a072b039e128661bbd1