5VJB · C / D

rna_00646__5VJB_1_C-D__repeat01

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00646__5VJB_1_C-D__repeat01
RNA-Solo ID: rna_00646
Split identity: rna_00646
Source structure: 5VJB_1_D
Length: 32 nt
Canonical chains: C, D
Partition: val

MD-derived metadata

1.98 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 15.44 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GCGGGGACGACCCUGCGCGGGGACGACCCUGC

Canonical chain	PDB chain	label_asym_id	auth_asym_id
C	C	C	C
D	D	D	D

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

bdcce2b1fc5c8ecf19ff9c7d1cf24f56d9a14369069dc86ddfddc598f49de1b6

rna.gro · SHA-256

5970c28c08f7ec4448d43d286fda3987b39e080d1cbe74f56e76c40d9117d6b9

rna.pdb · SHA-256

d71ed5e12b487ce80ab243ba0126602c10775d2caf84f3553f20536080213222