5VJB · C / D

rna_00646__5VJB_1_C-D__repeat02

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00646__5VJB_1_C-D__repeat02
RNA-Solo ID: rna_00646
Split identity: rna_00646
Source structure: 5VJB_1_C
Length: 32 nt
Canonical chains: C, D
Partition: val

MD-derived metadata

1.23 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 15.37 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GCGGGGACGACCCUGCGCGGGGACGACCCUGC

Canonical chain	PDB chain	label_asym_id	auth_asym_id
C	C	C	C
D	D	D	D

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

ef12b28f568aaf48928289e22cbd0bd144fa4fd97e13a7048e2c30aef8f7dd4b

rna.gro · SHA-256

5f1abab5617b7bbb6b935eeb8473a5fd1d2ab4c69690f92d6899c54431cb7606

rna.pdb · SHA-256

46ca3020d11684575eea22f9105c0cac3145125d7b31e0ef37ac2ae813201cbd