5UMD · B

rna_00717__5UMD_1_B

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00717__5UMD_1_B
RNA-Solo ID: rna_00717
Split identity: rna_00717
Source structure: 5UMD_1_B
Length: 118 nt
Canonical chains: B
Partition: train

MD-derived metadata

6.53 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 33.56 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GACUCGUUCAUACUACAGUGGAUACACCAGAUCCCAUCAGAACUCUGAAGUUAAGCACUGUAAGGCUUGGCUAGUACUGAGGUGGGAGACCGCUCGGGAACACCAGGUGAUGAGUCAG

Canonical chain	PDB chain	label_asym_id	auth_asym_id
B	B	B	B

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

aa0cca69d9ea48d1c6212f4879d0b2f050197d290c4d615b38658ec3043a4e36

rna.gro · SHA-256

587d806028aa462b07ba5dff1bb97ac3c191dc51474b232072586a7074db707c

rna.pdb · SHA-256

b855d630b82b4a640f50cf0e32534de9f1a9f2f88c6f07445839faee06300ca3