5ND9 · X

rna_00863__5ND9_1_X

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_00863__5ND9_1_X
RNA-Solo ID: rna_00863
Split identity: rna_00863
Source structure: 5ND9_1_B
Length: 114 nt
Canonical chains: X
Partition: train

MD-derived metadata

7.36 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 32.26 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGGUCUUUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC

Canonical chain	PDB chain	label_asym_id	auth_asym_id
X	X	X	B

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

9c3ae6a5ac5bdec3d905904641c9bfcbe4b4bf15933e4d5026d76a2a83204bf5

rna.gro · SHA-256

e640584cb87f58ed9772053c0823e231e5d18bc12a297cba6add9744e106bf8d

rna.pdb · SHA-256

9fa88a6f2d9b63c57e06e7fb7d401ae9fe637a50cb9b9bb28125ae2065180e73