5AMQ · B / D

rna_01054__5AMQ_1_B-D

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_01054__5AMQ_1_B-D
RNA-Solo ID: rna_01054
Split identity: rna_01054
Source structure: 5AMQ_1_B-c
Length: 24 nt
Canonical chains: B, D
Partition: train

MD-derived metadata

6.10 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 16.97 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

UUGGUAGUACACUACUGCUACCAA

Canonical chain	PDB chain	label_asym_id	auth_asym_id
B	B	B	B
D	D	D	c

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

05a98c2c9486251ddeeeb9d5f361f5256b2b5ea59e016438c00009e980d28577

rna.gro · SHA-256

89a56b2bd28d0a33ec941fb3a8c2b1b67146b94ba07ff9a03678a662d5da0d66

rna.pdb · SHA-256

2a7b9655acef6d681b180157e495bb4b459f5df7104a4154c33359be9b12b702