5YLZ · D

rna_01787__5YLZ_1_D

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_01787__5YLZ_1_D
RNA-Solo ID: rna_01787
Split identity: rna_01787
Source structure: 5YLZ_1_D
Length: 103 nt
Canonical chains: D
Partition: test_flex

MD-derived metadata

14.77 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 43.82 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUA

Canonical chain	PDB chain	label_asym_id	auth_asym_id
D	D	D	D

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rmsd_high

Inherited warnings: geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

07dcd5a2ef4686714cf0c3cc2b69d2a88c0e9e8df7878ccdada09ac1064ba2bc

rna.gro · SHA-256

c26022ac09458873ebd3c1f0e3250c4027da6e3f261f2d84a8cbec460185663a

rna.pdb · SHA-256

2c594080c8c7fef2af1ecbb0e110cbcaffb54f7c24da257bd6a3ce4c89a55036