5Y88 · D

rna_01932__5Y88_1_D

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_01932__5Y88_1_D
RNA-Solo ID: rna_01932
Split identity: rna_01932
Source structure: 5Y88_1_D
Length: 101 nt
Canonical chains: D
Partition: test_flex

MD-derived metadata

19.70 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 44.99 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GUUCGCGAAGUAACCCUUCGUGGACAUUUGGUCAAUUUGAAACAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
D	D	D	D

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rmsd_high

Inherited warnings: geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

0ea6c78b1119accc860900813439fdf7039bd7ebe83d0e447cae98e7da344ca8

rna.gro · SHA-256

bde35b83d342cca1f9d198c639b1283d2e02cc1479c2ec66f870e124643840cc

rna.pdb · SHA-256

37a76dde4fc21378ccdccb2aae02781c4b7725b264f6d6f3a6aa767be840aa91