8EKC · Z

rna_02253__8EKC_1_Z

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_02253__8EKC_1_Z
RNA-Solo ID: rna_02253
Split identity: rna_02253
Source structure: 8EKC_1_B
Length: 120 nt
Canonical chains: Z
Partition: train

MD-derived metadata

5.39 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 32.52 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

UGCCUGGCGGCAGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
Z	Z	Z	B

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

9152d175a15d8abba90c526f5a58435269a33f47625be38c0b0693c484e8cc90

rna.gro · SHA-256

1c17cc8d853062ca148c139dc4fdcf261784e9ec341368bdc65d4b9253cb3195

rna.pdb · SHA-256

4162cab1e3662091e5152f5b323c8d50bb5ce521f9f07452e817d8043028e038