3PTX · F

rna_02921__3PTX_1_F

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_02921__3PTX_1_F
RNA-Solo ID: rna_02921
Split identity: rna_02921
Source structure: 3PTX_1_R
Length: 45 nt
Canonical chains: F
Partition: train

MD-derived metadata

17.66 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 34.92 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

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Canonical chain	PDB chain	label_asym_id	auth_asym_id
F	F	F	R

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rg_spike;geometry:rmsd_high

Inherited warnings: geometry:rg_spike;geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

91ab1285e976c8cda33d8eace907ef0b3739604dea0141f9153f8b2cfcbec698

rna.gro · SHA-256

0b3bf8448982910bce2fe558d534943ed47324a7e4f248da4cdce8198d638cfd

rna.pdb · SHA-256

f4cd1af8d273600dabef98a576cdd917970dd9951f5169037703e726a5852c01