8AXF · B

rna_03397__8AXF_1_B

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_03397__8AXF_1_B
RNA-Solo ID: rna_03397
Split identity: rna_03397
Source structure: 8AXF_1_Q
Length: 42 nt
Canonical chains: B
Partition: train

MD-derived metadata

21.36 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 29.75 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

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Canonical chain	PDB chain	label_asym_id	auth_asym_id
B	B	B	Q

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rg_spike;geometry:rmsd_high

Inherited warnings: geometry:rg_spike;geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

7df59f8c3d286c91ea5f0082002e27e3ada4242ae14dd586a4b232f22ab27e8d

rna.gro · SHA-256

ad2776d06ddb605418a533fb2b9b23a2f9fb4a7f4fc4be31db11f05556483d7b

rna.pdb · SHA-256

dda3199958e67a31229485736a9abd46c93b3e0286fff9c047906862b117b96f