5LZD · W

rna_03548__5LZD_1_W

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_03548__5LZD_1_W
RNA-Solo ID: rna_03548
Split identity: rna_03548
Source structure: 5LZD_1_x
Length: 48 nt
Canonical chains: W
Partition: train

MD-derived metadata

19.40 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 29.04 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

AAGGAGGUUCAUUAAUGUGACACGGCCCAUCGGUUGCAGGUCUGCACC

Canonical chain	PDB chain	label_asym_id	auth_asym_id
W	W	W	x

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: geometry:rmsd_high

Inherited warnings: geometry:rmsd_high

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

c312d4dffd8d4ef0610dc1b2abcfd3dc14053dbe34709e7278b93d51419d163a

rna.gro · SHA-256

a65ebcf88de874dc1df6c59ac423710e178c8339caa4fb66e1bbefd60d2a8f1f

rna.pdb · SHA-256

dcd701b2eb87be1c5dba3e7335289d61b32b47b007e48a292474b7c2889a09ca