7YGD · A / B / C

rna_04060__7YGD_1_A-B-C

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_04060__7YGD_1_A-B-C
RNA-Solo ID: rna_04060
Split identity: rna_04060
Source structure: 7YGD_1_N
Length: 389 nt
Canonical chains: A, B, C
Partition: test_flex

MD-derived metadata

6.95 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 39.24 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

UCGCCGGAAAAGUUAUCAGGCAUGCACCUGGUAGCUAGUCUUUAAACCAAUAGAUUGCAUCGGUUUAAAAGGCAAGACCGUCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUCACAGACUAAAUGUCGGUCGGGGAAGAUGUAUUCUUCUCAUAAGAUAUAGUCGGACCUCUCCUUAAUGGGAGCUAGCGGAUGAAGUGAUGCAACACUGGAGCCGCUGGGAACUAAUUUGUAUGCGAAAGUAUAUUGAUUAGUUUUGGAGU

Canonical chain	PDB chain	label_asym_id	auth_asym_id
A	A	A	A
B	B	B	B
C	C	C	N

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

6697a615f672dbe14746709fcd528ef97fa931b28f7aad120466ed56c80fd073

rna.gro · SHA-256

5b6322bcd4cec5c6a8e842e3176f8985e4b5c0335476fbf83c7949833316f576

rna.pdb · SHA-256

7475f08878a4640922a7f5916babc79f4ae5c5cc096ada823a1a1495a6530254