3JBU · YA

rna_04099__3JBU_1_YA

Coming soon

Source PDB ↗

Sample identity

Trajectory ID: rna_04099__3JBU_1_YA
RNA-Solo ID: rna_04099
Split identity: rna_04099
Source structure: 3JBU_1_X
Length: 11 nt
Canonical chains: YA
Partition: train

MD-derived metadata

7.17 Å

Median heavy-atom RMSD to frame 0, without an additional fit.

Mean radius of gyration: 13.39 Å · heavy atoms
Frames: 1,001 · 0–100 ns
Coordinate status: pass

These are MD statistics, not RNADynNet predictions. Calculation details

Structure & trajectory preview

Interactive trajectory preview, per-residue RMSF and NMC: Coming soon.

The original experimental source structure and the matching MD initial structure are different artifacts. Use the release GRO/PDB with its XTC; do not substitute the source PDB.

Sequence & chain mapping

GCUGGCCCUCA

Canonical chain	PDB chain	label_asym_id	auth_asym_id
YA	A	YA	X

Residue-level mapping and atom ranges will accompany the trajectory package.

Quality information

Current warnings: None recorded in this field.

Inherited warnings: None recorded in this field.

A coordinate check pass does not establish equilibrium or convergence. Diagnostic flags are retained; they are not automatic exclusion labels.

Historical aliases

No alternate ID recorded.

Files & integrity

RNADynBench-v0.1-revision-20260920-x0

File	Contents	Availability
rna.xtc	RNA-only coordinates · 1,001 frames	Coming soon
rna.gro	Matching initial coordinates / topology	Coming soon
rna.pdb	Matching initial structure with PDB chain mapping	Coming soon

rna.xtc · SHA-256

2200e5eb52ffee8aa4dc060a3bf959366b4259493d4629aeb44efddfc8d062a7

rna.gro · SHA-256

2f13e3969d546a981ca6dc8c6f64a3f9cd63fe0e6d976cb0d3d7daed79632b07

rna.pdb · SHA-256

86d52d255e20013fd7bd4dc548cd6059a5fd53e5446b48c8341ba2a49ea331c4